Presentations

2021

Oral Presentations

  • Chowdhury, N. B., Schroeder, W. L., Zhang, D., Simon, M. N., Hirel, B., Cahoon, E., Maranas, C. D., Saha, R.,  “Integrated Computational and Experimental Study to Dissect the Stress Response of Maize Root”, Oral Presentation. 2021 AICHE Annual Meeting, November 9, 2021.
  • Alsiyabi, A., Brown, B., Immethun, C., Long, D., and Saha, R., “Model-Guided Design Strategies for Bioplastic Overproduction in Rhodopseudomonas Palustris”, AIChE Annual Meeting, Nov 7-12, 2021
  • Schroeder, W. L., Baber, A. S., and Saha, R., “Introducing a Pair of Tools for the in silico Design and Dynamic Simulation of Eukaryotic Genetic Circuits”, 2021 AIChE Annual Meeting, November 9, 2021.
  • Immethun, C.M., and Saha, R.. “Creating stable mutants in the plant growth-promoting polyploid Rhodopseudomonas palustris CGA009″, AIChE Annual Meeting, Boston, MA,  November 7-11, 2021.
  • Morris, D. S., Immethun, C. M., Wilkins, M. R., Saha, R., “Heterologous Gene Expression Yields Higher Polyhydroxybutyrate Production in Paraburkholderia sacchari”, AIChE Annual Meeting, Nov 7-12, 2021
  • Islam, M. M., Goertzen, A., and Saha, R., “Metabolic Modeling to Explore the Landscape of Pancreatic Ductal Adenocarcinoma Cells in Diverse Physiological Conditions”,AIChE Annual Meeting, Nov 7-12, 2021.
  • Islam, M. M., Thomas, V. C., and Saha, R., “Omics-Informed Metabolic Modeling Identifies Regulatory Mechanisms in Staphylococcus Aureus mutants”, AIChE Annual Meeting, Nov 7-12, 2021.
  • Long, D., and Saha, R., “The Green Machine: Bacterial strain design for kids” College of Engineering Graduate Symposium, Keynote, February 26th, 2021.
  • Alsiyabi, A., Brown, B., Immethun, C., and Saha R., “Harnessing sunlight to convert CO2 into biodegradable plastic” College of Engineering Graduate Symposium, February 26th, 2021

Poster Presentations

  • Alsiyabi, A., Solis, A.G., Cahoon, E.B., and Saha, R., “A Kinetic Model of Plant Sphingolipid Metabolism Identifies Key Enzymes and Regulatory Interactions in the Pathway”, AIChE Annual Meeting, Nov 7-12, 2021
  • Chowdhury, N., Schroeder, W., Zhang, D., Simons, M., Hirel, B., Cahoon, E., Maranas, C., and Saha, R., “Stress Response Study of Zea mays by Incorporating Omics Information into its Genome-Scale Metabolic Model”, COnstraint-Based Reconstruction and Analysis (COBRA) Conference, virtual, March 1-2, 2021.
  • Islam, M. M., Thomas, V. C., and Saha, R., “Optimization-Based Analysis of Comparative Metabolomic Data Identifies Regulatory Mechanisms in Staphylococcus Aureus Mutants”, COnstraint-Based Reconstruction and Analysis (COBRA) Conference, virtual, March 1-2, 2021.
  • Schroeder, W. L., and Saha, R., “Introducing and Optimization- and Explicit Runge-Kutta- Based Approach to Perform Dynamic Flux Balance Analysis”, COnstraint-Based Reconstruction and Analysis (COBRA) Conference, virtual, March 1-2, 2021.
  • Alsiyabi, A., Brown, B., Immethun, C., and Saha R., “Metabolic Modeling and Fluorometry Elucidate the Interplay between Electron Sources and Sinks in a Purple Non-Sulfur Bacterium”, COnstraint-Based Reconstruction and Analysis (COBRA) Conference, virtual, March 1-2, 2021.
  • Chowdhury, N., and Saha, R., “Stress Response Study of Zea mays by Incorporating Omics Information into its Genome-Scale Metabolic Model”, College of Engineering Graduate Research Symposium, University of Nebraska-Lincoln, February 26, 2021.
  • Brown, B., and Saha, R., “Hydrogen Biofuel Production from a Versatile Bacterium Using Agricultural Waste.”, 3in 5 pitch competition, College of Engineering Graduate Research Symposium, University of Nebraska-Lincoln, February 26, 2021.
  • Kathol, M., Immethun, C., and Saha, R., “Investigating the relaxase behavior and replication functionality of the mobilization protein mobV in the plasmid pBBR1”, 3in 5 pitch competition, College of Engineering Graduate Research Symposium, University of Nebraska-Lincoln, February 26, 2021.
  • Islam, M. M., “Optimization in Biological Systems: The Legacy of Engineering Complex Processes”, College of Engineering Graduate Research Symposium, University of Nebraska-Lincoln, February 26, 2021

2020

Oral Presentations

Poster Presentation

2019

Oral Presentations

Poster Presentations

2018

Oral Presentations

Poster Presentations

  • Long, D., Immethun, C., and Saha, R., “Development of Actinobacillus succinogenes 130Z as a Biotechnology Host for Succinic Acid Production“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
  • Islam, M. M., Sandhu, J., Walia, H, and Saha, R., “MiReN: An Optimization Tool for Data-Driven Discovery of Global Regulatory Phenomena Used to Elucidate the Heat Stress Response Mechanism in Rice Seed”, COnstraint-Based Reconstruction and Analysis (COBRA) Conference, Seattle, WA, October 14-16, 2018
  • O’Neil, J., Al-Siyabi, A., and Saha, R., “Maximization of Succinic Acid Production on A. succinogenes via Genome-scale Metabolic Modeling”, UNL summer Research Fair, Lincoln, NE, 2018
  • Daggumati, S. R., Le, T., Islam, M. M., and Saha, R., “Utilizing Methane-Oxidizing Microbes to Mitigate Trichloroethylene in Soil and Groundwater”, UNL summer Research Fair, Lincoln, NE, 2018
  • Maaliao, C., Islam, M. M., and Saha, R., “Understanding Stress Response Mechanism in Rice Seed”, UNL summer Research Fair, Lincoln, NE, 2018
  • Islam, M. M., Thomas, V. C., and Saha, R., “Towards Data-driven Discovery of Novel Therapeutic Targets through Metabolic Modeling of Staphylococcus aureus”, UNL Spring Research Fair, Lincoln, NE, April 10, 2018

2017

Oral Presentations

Poster Presentations

Prior to joining UNL

Conference Proceedings

  • Saha, R., Suresh, S., Park, W., Lee, D.Y. and Karimi, I.A., “Microbial fuel cell in perspective of strain improvement and mediator selection”, Joint third AOHUPO and fourth structural biology and functional genomics conference, 2006, pp 290.
  • Saha, R., Park, W, Lee., D.Y. and Karimi, I.A., “Comparison on web-based simulation tools of biochemical and cellular model in systems biology”, International conference on modeling in chemical and biological engineering sciences, 2006, pp. 10.

Oral Presentations

  • Saha, R, Liu, D., Hoynes-O’Connor, A.G., Liberton, M., Yu, J., Bhattacharyya, M., Balassy, A., Moon, T.S., Maranas, C.D., Pakrasi, H.B., “Synechocystis Sp. PCC 6803: Light Plus Endogenous Regulation Governing Gene Expression Patterns in the Diurnal Cycle”, AIChE annual meeting, Salt Lake City, UT, Nov 8-13, 2015.
  • Saha, R., Berla, B.M., Pakrasi, H.B. and Maranas, C.D., “Computations-driven optimization of alkane production in Synechocystis sp. PCC 6803”, AIChE annual meeting, Atlanta, GA, Nov 16-21, 2014.
  • Saha, R., Simons, M., Kumar, A., Guillard, L., Hirel, B and Maranas, C.D., “Towards multi-tissue type metabolic modeling of maize”, AIChE annual meeting, San Francisco, CA, Nov 3-8, 2013.
  • Saha, R., Berla, B.M., Mueller, T.J., Welkie, D.J., Sherman, L., Pakrasi, H.B. and Maranas, C.D., “Comparative genome-scale modeling of the metabolic potential of cyanobacteria Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC6803”, 11th workshop on cyanobacteria, St. Louis, MO, Aug 7-11, 2013.
  • Saha, R., Verseput, A.T., Mueller, T.J. and Maranas, C.D., “Contrasting the metabolic capabilities of cyanobacterial strains for assessing bio-production platform selection”, AIChE annual meeting, Pittsburgh, PA, Oct 28-Nov 2, 2012.
  • Saha, R., Berla, B.M., Mueller, T.J., Elvitigala, T., Page, L.E., Pakrasi, H.B. and Maranas, C.D., “Contrasting the metabolic capabilities of cyanobacterial species for assessing bio-production platform selection”, ACS annual meeting, San Diego, CA, Mar 25-29, 2012.
  • Saha, R., Berla, B.M., Elvitigala, T., Page, L.E., Pakrasi, H.B. and Maranas, C.D., “Contrasting the Metabolic Capabilities of Multiple Cyanobacterial Species”, AIChE annual meeting, Minneapolis, MN, Oct 16-21, 2011.
  • Saha, R., Suthers, P.F. and Maranas, C.D., “Towards Genome-Scale Metabolic Reconstruction of Plant Metabolism”, AIChE annual meeting, Salt Lake City, UT, Nov 7-14, 2010.
  • Saha, R., Park, W, Lee, D.Y. and Karimi, D.Y., “Comparison on web-based simulation tools of biochemical and cellular model in systems biology”, International conference on modeling in chemical and biological engineering sciences, Bangkok, Oct 25-27, 2006.

Poster Presentations

  • Yu, J., Saha, R., Berla, B.M., Mueller, T.J., Kumar, A., Simons, M., Khodayari, A., Whitney Hollinshead, W., Abernathy, M., He, L., Tang, Y.J., Maranas, C.D., Pakrasi, H.B., “Systems Level Study of a Novel Fast-Growing Cyanobacterial Strain for Next- Generation Biofuel Production”, DOE genomic sciences meeting, Tysons, VA, Feb 22-25, 2015.
  • Saha, R., Simons, M., Kumar, A., Guillard, L., Hirel, B and Maranas, C.D., “Assessing the Metabolic Impact of Nitrogen Availability using a Compartmentalized Maize Leaf Genome-Scale Model”, 3rd COBRA meeting, Winter Green, VA, May 20-23, 2014.
  • Saha, R., Simons, M., Islam, M.M., Zomorrodi, A.R., Hirel, B and Maranas, C.D., “Metabolic modeling of multi tissue and multi organism systems”, DOE genomic sciences meeting, Crystal City, VA, Feb 10-12, 2014.
  • Saha, R., Mueller, T.J., Berla, B.M., Pakrasi, B.M. and Marans, C.D., “Construction of metabolic models for a family of cyanobacteria”, DOE genomic sciences meeting, Bethesda, MD, Feb 24-27, 2013.
  • Saha, R., Berla, B.M., Mueller, T.J., Elvitigala, T., Page, L.E., Pakrasi, H.B. and Maranas, C.D., “Contrasting the metabolic capabilities of Cyanothece sp. ATCC 51142 and Synechocystis sp. PCC6803”, DOE genomic sciences meeting, Bethesda, MD, Feb 26-29, 2012.
  • Saha, R., Suthers, P.F. and Maranas, C.D., “Zea mays iRS1563: A Comprehensive Genome-Scale Metabolic Reconstruction of Maize Metabolism”, DOE genomic sciences meeting, Crystal City, VA, Apr 10-13, 2011.
  • Saha, R., Suresh, S., Park, W., Lee, D.Y. and Karimi, I.A., “Microbial fuel cell in perspective of strain improvement and mediator selection”, Joint third AOHUPO and fourth structural biology and functional genomics conference, Singapore, Dec 4-7, 2006.
  • Saha, R., Park, W, Lee., D.Y. and Karimi, D.Y., “Comparison on web-based simulation tools of biochemical and cellular model in systems biology”, Annual graduate students’ symposium, NUS, Singapore, Sep 24, 2006.