AIChE – SahaSSBio

Oral Presentations

Shahreen, N., Thomas, VC., and Saha, R., “Omics-Informed Metabolic Modeling of Staphylococcus Aureus Reveals Underlying Principles of Overflow Metabolism”, AIChE Annual Meeting, Nov 5–10, 2023
Osinuga, A., Cahoon, R., Cahoon, E., and Saha, R., “Modeling Sphingolipid Metabolism and Prediction of Orosomucoid (ORM) Proteins’ Regulatory Roles: ¹⁵N Stable Isotope Labeling Studies”, Oral Presentation, AIChE Annual Meeting, Nov 5–10, 2023″
Chowdhury, N. B., Schroeder, W. L., Zhang, D., Simon, M. N., Hirel, B., Cahoon, E., Maranas, C. D., Saha, R., “Integrated Computational and Experimental Study to Dissect the Stress Response of Maize Root”, Oral Presentation. 2021 AICHE Annual Meeting, November 9, 2021.
Alsiyabi, A., Brown, B., Immethun, C., Long, D., and Saha, R., “Model-Guided Design Strategies for Bioplastic Overproduction in Rhodopseudomonas Palustris”, AIChE Annual Meeting, Nov 7-12, 2021
Schroeder, W. L., Baber, A. S., and Saha, R., “Introducing a Pair of Tools for the in silico Design and Dynamic Simulation of Eukaryotic Genetic Circuits”, 2021 AIChE Annual Meeting, November 9, 2021.
Immethun, C.M., and Saha, R.. “Creating stable mutants in the plant growth-promoting polyploid Rhodopseudomonas palustris CGA009″, AIChE Annual Meeting, Boston, MA, November 7-11, 2021.
Morris, D. S., Immethun, C. M., Wilkins, M. R., Saha, R., “Heterologous Gene Expression Yields Higher Polyhydroxybutyrate Production in Paraburkholderia sacchari”, AIChE Annual Meeting, Nov 7-12, 2021
Islam, M. M., Goertzen, A., and Saha, R., “Metabolic Modeling to Explore the Landscape of Pancreatic Ductal Adenocarcinoma Cells in Diverse Physiological Conditions”,AIChE Annual Meeting, Nov 7-12, 2021.
Islam, M. M., Thomas, V. C., and Saha, R., “Omics-Informed Metabolic Modeling Identifies Regulatory Mechanisms in Staphylococcus Aureus mutants”, AIChE Annual Meeting, Nov 7-12, 2021.
Alsiyabi, A. and Saha, R., “Metabolic Modeling and Pulse Amplitude Modulation Fluorometry Elucidate the Interplay between Photosynthesis and Carbon Fixation in a Purple Non-Sulfur Bacterium“, Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual., November 16-20, 2020.
Immethun, C. and Saha, R., “Engineering a purple non-sulfur bacterium to expand symbiotic nitrogen fixation”, Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual., November 16-20, 2020.
Islam, M. M., Thomas, V. C., and Saha, R., “Optimization-Based Analysis of Comparative Metabolomic Data Identifies Regulatory Mechanisms in Staphylococcus Aureus mutants”, Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual., November 16-20, 2020.
Brown, B.. and Saha, R., “Conversion of Lignin into Bioplastic by Rhodopseudomonas palustris,” Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual. Nov 15-20, 2020.
Brown, B.. and Saha, R., “Rhodopseudomonas palustrisPolyhydroxyalkanoate Production from a Lignin Aromatic and Quantification via Flow Cytometry,” Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual. Nov 15-20, 2020.
Schroeder, W. L. and Saha, R. “Computation-Driven Analysis of Model Polyextremotolerant Fungus Exophiala dermatitidis: Defensive Pigment Metabolic Costs and Human Applications”. Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual. Nov. 16, 2020.
Schroeder, W. L. and Saha, R. “Introducing and Optimization- and Explicit Runge-Kutta- Based Approach to Perform Dynamic Flux Balance Analysis”. Prerecorded Oral Presentation. 2020 AICHE Annual Meeting, Virtual. Nov. 18, 2020.
Schroeder, W. L. and Saha, R. “Predicting Enzyme Kinetics and Regulations from Dynamic Flux Balance Analysis Through Kinetic Optimization Using Integer Conditions”. Prerecorded Oral Presentation. 2020 AICHE Annual Meeting, Virtual. Nov. 19, 2020.
Schroeder, W. L. and Saha, R.. “OptFill: A Tool for Infeasible Cycle-Free Gapfilling of Stoichiometric Metabolic Models”. Poster Presentation. 2020 AICHE Annual Meeting, Virtual. Nov. 20, 2020.
Long, D., Immethun, C., Wilkins, M., and Saha, R., “Transcriptional Control of Gene Expression in Paraburkholderia sacchari“, AIChE Annual Meeting 2020, Virtual, November 16-20, 2020.
Alsiyabi, A., and Saha, R., “Metabolic Modeling and Pulse Amplitude Modulation Fluorometry Elucidate the Interplay between Photosynthesis and Carbon Fixation in a Purple Non-Sulfur Bacterium”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
Schroeder, W., and Saha, R., “EuGeneCD: A Computational Tool for Qualitative Genetic Circuit Design for Eukaryotic Organisms”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
Schroeder, W., and Saha, R., “Optfill: A Novel Optimization-Based Tool to Automate the Gapfilling of Genome-Scale Metabolic Models”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
Islam, M. M., Fernando, S. C., and Saha, R., “An in silico study of the Metabolic Transactions in the Rumen Microbiome and the Metabolic Shifts Inflicted By Virome Interactions”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
Alsiyabi, A., and Saha, R., “Metabolic Modeling of Sphingolipid Metabolism to Elucidate the Flux Changes and Regulatory Events Induced By Biologically-Significant Perturbations”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
Long, D., Immethun, C., Wilkins, M., and Saha, R., “Development of a Non-Leaky Inducible System for Tunable Gene Expression in Actinobacillus Succinogenes 130 Z and Application for Increased Succinic Acid Production”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
Brown, B., Wilkins, M., and Saha, R., “Conversion of Lignin into Biodegradable Plastic By Rhodopseudomonas Palustris”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
Immethun, C., Changa, T., and Saha, R., “Unlocking the Genetic Potential of Rhodopseudomonas Palustris CGA009 for Lignin Valorization”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
Schroeder, W. and Saha, R., ” KOPTIC: A Novel Approach for In Silico Prediction of Enzyme Kinetics and Regulation” AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
Islam, M. M., Thomas, V. C., and Saha, R., “Data-Driven Discovery of Novel Therapeutic Targets through Metabolic Modeling of Staphylococcus aureus“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
Schroeder, W. and Saha, R., ” KOPTIC: A Novel Approach for In Silico Prediction of Enzyme Kinetics and Regulation” AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
Immethun, C., Long, D., and Saha, R., ” Transcriptional Regulators for PRedictable and PRecise Gene Expression in the Metabolically Versatile Rhodopseudomonas palustris CGA009“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
Islam, M. M., Fernando, S. C., and Saha, R., “Elucidating Microbiome-Virome Interactions and Metabolic Transactions in Bovine Rumen Through in-silico Genome-scale Metabolic Modeling”, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
Schroeder, W., Kumar, J., Saha, R., and Harris, S., “Computation-Driven Mechanistic Understanding of the Cellular Cost and Regulation of Melanin Production“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
Alsiyabi, A. and Saha, R., “Towards a Metabolic and Expression Model of the Metabolically Versatile Bacterium Rhodopseudomonas palustris“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
Schroeder, W. and Saha, R., ” OptFill: A Novel Optimization-Based Tool to Automate the Gapfilling of Genome-Scale Metabolic Models“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
Islam, M. M., Saha, R., Chaudhuri, S., and Thomas, V. C., ” Elucidating the Physiological Significance of Nitric Oxide Synthase (NOS) in Staphylococcus aureus through Metabolic Modeling“, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
Schroeder, W., and Saha, R., “K-Ath – Towards a Multi-Tissue Kinetic Model of Arabidopsis thaliana “, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
Islam, M. M., Schroeder, W., Fernando, S. C., and Saha, R., “Microbiome-Virome Interactions in Bovine Rumen: The Role of Auxiliary Metabolic Genes in Relaxing Metabolic Bottlenecks “, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
Schroeder, W., Kumar, J., and Saha, R., “Computation-Driven Mechanistic Understanding of the Cellular Cost and Regulation of Melanin Production “, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
Saha, R, Liu, D., Hoynes-O’Connor, A.G., Liberton, M., Yu, J., Bhattacharyya, M., Balassy, A., Moon, T.S., Maranas, C.D., Pakrasi, H.B., “Synechocystis Sp. PCC 6803: Light Plus Endogenous Regulation Governing Gene Expression Patterns in the Diurnal Cycle”, AIChE annual meeting, Salt Lake City, UT, Nov 8-13, 2015.
Saha, R., Berla, B.M., Pakrasi, H.B. and Maranas, C.D., “Computations-driven optimization of alkane production in Synechocystis sp. PCC 6803”, AIChE annual meeting, Atlanta, GA, Nov 16-21, 2014.
Saha, R., Simons, M., Kumar, A., Guillard, L., Hirel, B and Maranas, C.D., “Towards multi-tissue type metabolic modeling of maize”, AIChE annual meeting, San Francisco, CA, Nov 3-8, 2013.
Saha, R., Verseput, A.T., Mueller, T.J. and Maranas, C.D., “Contrasting the metabolic capabilities of cyanobacterial strains for assessing bio-production platform selection”, AIChE annual meeting, Pittsburgh, PA, Oct 28-Nov 2, 2012.
Saha, R., Berla, B.M., Elvitigala, T., Page, L.E., Pakrasi, H.B. and Maranas, C.D., “Contrasting the Metabolic Capabilities of Multiple Cyanobacterial Species”, AIChE annual meeting, Minneapolis, MN, Oct 16-21, 2011.
Saha, R., Suthers, P.F. and Maranas, C.D., “Towards Genome-Scale Metabolic Reconstruction of Plant Metabolism”, AIChE annual meeting, Salt Lake City, UT, Nov 7-14, 2010.

Poster Presentations

Alsiyabi, A., Solis, A.G., Cahoon, E.B., and Saha, R., “A Kinetic Model of Plant Sphingolipid Metabolism Identifies Key Enzymes and Regulatory Interactions in the Pathway”, AIChE Annual Meeting, Nov 7-12, 2021
Islam, M. M., “Metabolic Modeling of Microbes, Plants, and Microbial Ecosystems: Discovery and Redesign”, AIChE Virtual Annual Meeting 2020, November 16-20, 2020.
Alsiyabi, A. and Saha, R., “Predicting the Regulatory Role of ORM Proteins in the Sphingolipid Biosynthesis Pathway Using Ensemble Kinetic Modeling”,Poster Presentation. 2020 AICHE Annual Meeting, Virtual., November 16-20, 2020.
Islam, M. M., Sandhu, J., Walia, H, and Saha, R., “Data-Driven Identification of Global Regulatory Relationship in Rice Seed Under Heat Stress”, AIChE Virtual Annual Meeting 2020, November 16-20, 2020.
Schroeder, W. L. “Toward Interventions Aiding the Future Viability of Important Crops Through Systems Biology”. Prerecorded Poster Presentation. 2020 AICHE Annual Meeting, Virtual. Nov. 16, 2020.
Schroeder, W. L. and Saha, R.. “OptFill: A Tool for Infeasible Cycle-Free Gapfilling of Stoichiometric Metabolic Models”. Poster Presentation. 2020 AICHE Annual Meeting, Virtual. Nov. 20, 2020.
Islam, M. M., Sandhu, J., Walia, H.,, and Saha, R., “Miren: An Optimization Tool for Transcriptomic Data-Driven Discovery of Global Regulatory Phenomena during Heat Stress in Rice Seed”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
Long, D., Immethun, C., and Saha, R., “Development of Actinobacillus succinogenes 130Z as a Biotechnology Host for Succinic Acid Production“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
Islam, M. M., Sandhu, J., Walia, H, and Saha, R., “Effect of Heat Stress on Rice Seed Development: Discovering Global Regulatory Players and Modeling of Rice Metabolism “, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
Daggumati, S.R., Le, T., Islam, M. M., and Saha, R., “Towards Modeling of Methane Recycling Lake Washington Microbial Community“, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.