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Oral Presentations
- Chowdhury, N. B., Schroeder, W. L., Zhang, D., Simon, M. N., Hirel, B., Cahoon, E., Maranas, C. D., Saha, R., “Integrated Computational and Experimental Study to Dissect the Stress Response of Maize Root”, Oral Presentation. 2021 AICHE Annual Meeting, November 9, 2021.
- Alsiyabi, A., Brown, B., Immethun, C., Long, D., and Saha, R., “Model-Guided Design Strategies for Bioplastic Overproduction in Rhodopseudomonas Palustris”, AIChE Annual Meeting, Nov 7-12, 2021
- Schroeder, W. L., Baber, A. S., and Saha, R., “Introducing a Pair of Tools for the in silico Design and Dynamic Simulation of Eukaryotic Genetic Circuits”, 2021 AIChE Annual Meeting, November 9, 2021.
- Immethun, C.M., and Saha, R.. “Creating stable mutants in the plant growth-promoting polyploid Rhodopseudomonas palustris CGA009″, AIChE Annual Meeting, Boston, MA, November 7-11, 2021.
- Morris, D. S., Immethun, C. M., Wilkins, M. R., Saha, R., “Heterologous Gene Expression Yields Higher Polyhydroxybutyrate Production in Paraburkholderia sacchari”, AIChE Annual Meeting, Nov 7-12, 2021
- Islam, M. M., Goertzen, A., and Saha, R., “Metabolic Modeling to Explore the Landscape of Pancreatic Ductal Adenocarcinoma Cells in Diverse Physiological Conditions”,AIChE Annual Meeting, Nov 7-12, 2021.
- Islam, M. M., Thomas, V. C., and Saha, R., “Omics-Informed Metabolic Modeling Identifies Regulatory Mechanisms in Staphylococcus Aureus mutants”, AIChE Annual Meeting, Nov 7-12, 2021.
- Alsiyabi, A. and Saha, R., “Metabolic Modeling and Pulse Amplitude Modulation Fluorometry Elucidate the Interplay between Photosynthesis and Carbon Fixation in a Purple Non-Sulfur Bacterium“, Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual., November 16-20, 2020.
- Immethun, C. and Saha, R., “Engineering a purple non-sulfur bacterium to expand symbiotic nitrogen fixation”, Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual., November 16-20, 2020.
- Islam, M. M., Thomas, V. C., and Saha, R., “Optimization-Based Analysis of Comparative Metabolomic Data Identifies Regulatory Mechanisms in Staphylococcus Aureus mutants”, Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual., November 16-20, 2020.
- Brown, B.. and Saha, R., “Conversion of Lignin into Bioplastic by Rhodopseudomonas palustris,” Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual. Nov 15-20, 2020.
- Brown, B.. and Saha, R., “Rhodopseudomonas palustrisPolyhydroxyalkanoate Production from a Lignin Aromatic and Quantification via Flow Cytometry,” Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual. Nov 15-20, 2020.
- Schroeder, W. L. and Saha, R. “Computation-Driven Analysis of Model Polyextremotolerant Fungus Exophiala dermatitidis: Defensive Pigment Metabolic Costs and Human Applications”. Prerecorded Oral Presentation.2020 AICHE Annual Meeting, Virtual. Nov. 16, 2020.
- Schroeder, W. L. and Saha, R. “Introducing and Optimization- and Explicit Runge-Kutta- Based Approach to Perform Dynamic Flux Balance Analysis”. Prerecorded Oral Presentation. 2020 AICHE Annual Meeting, Virtual. Nov. 18, 2020.
- Schroeder, W. L. and Saha, R. “Predicting Enzyme Kinetics and Regulations from Dynamic Flux Balance Analysis Through Kinetic Optimization Using Integer Conditions”. Prerecorded Oral Presentation. 2020 AICHE Annual Meeting, Virtual. Nov. 19, 2020.
- Schroeder, W. L. and Saha, R.. “OptFill: A Tool for Infeasible Cycle-Free Gapfilling of Stoichiometric Metabolic Models”. Poster Presentation. 2020 AICHE Annual Meeting, Virtual. Nov. 20, 2020.
- Long, D., Immethun, C., Wilkins, M., and Saha, R., “Transcriptional Control of Gene Expression in Paraburkholderia sacchari“, AIChE Annual Meeting 2020, Virtual, November 16-20, 2020.
- Alsiyabi, A., and Saha, R., “Metabolic Modeling and Pulse Amplitude Modulation Fluorometry Elucidate the Interplay between Photosynthesis and Carbon Fixation in a Purple Non-Sulfur Bacterium”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
- Schroeder, W., and Saha, R., “EuGeneCD: A Computational Tool for Qualitative Genetic Circuit Design for Eukaryotic Organisms”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
- Schroeder, W., and Saha, R., “Optfill: A Novel Optimization-Based Tool to Automate the Gapfilling of Genome-Scale Metabolic Models”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
- Islam, M. M., Fernando, S. C., and Saha, R., “An in silico study of the Metabolic Transactions in the Rumen Microbiome and the Metabolic Shifts Inflicted By Virome Interactions”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
- Alsiyabi, A., and Saha, R., “Metabolic Modeling of Sphingolipid Metabolism to Elucidate the Flux Changes and Regulatory Events Induced By Biologically-Significant Perturbations”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
- Long, D., Immethun, C., Wilkins, M., and Saha, R., “Development of a Non-Leaky Inducible System for Tunable Gene Expression in Actinobacillus Succinogenes 130 Z and Application for Increased Succinic Acid Production”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
- Brown, B., Wilkins, M., and Saha, R., “Conversion of Lignin into Biodegradable Plastic By Rhodopseudomonas Palustris”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
- Immethun, C., Changa, T., and Saha, R., “Unlocking the Genetic Potential of Rhodopseudomonas Palustris CGA009 for Lignin Valorization”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
- Schroeder, W. and Saha, R., ” KOPTIC: A Novel Approach for In Silico Prediction of Enzyme Kinetics and Regulation” AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
- Islam, M. M., Thomas, V. C., and Saha, R., “Data-Driven Discovery of Novel Therapeutic Targets through Metabolic Modeling of Staphylococcus aureus“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
- Schroeder, W. and Saha, R., ” KOPTIC: A Novel Approach for In Silico Prediction of Enzyme Kinetics and Regulation” AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
- Immethun, C., Long, D., and Saha, R., ” Transcriptional Regulators for PRedictable and PRecise Gene Expression in the Metabolically Versatile Rhodopseudomonas palustris CGA009“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
- Islam, M. M., Fernando, S. C., and Saha, R., “Elucidating Microbiome-Virome Interactions and Metabolic Transactions in Bovine Rumen Through in-silico Genome-scale Metabolic Modeling”, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
- Schroeder, W., Kumar, J., Saha, R., and Harris, S., “Computation-Driven Mechanistic Understanding of the Cellular Cost and Regulation of Melanin Production“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
- Alsiyabi, A. and Saha, R., “Towards a Metabolic and Expression Model of the Metabolically Versatile Bacterium Rhodopseudomonas palustris“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
- Schroeder, W. and Saha, R., ” OptFill: A Novel Optimization-Based Tool to Automate the Gapfilling of Genome-Scale Metabolic Models“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
- Islam, M. M., Saha, R., Chaudhuri, S., and Thomas, V. C., ” Elucidating the Physiological Significance of Nitric Oxide Synthase (NOS) in Staphylococcus aureus through Metabolic Modeling“, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
- Schroeder, W., and Saha, R., “K-Ath – Towards a Multi-Tissue Kinetic Model of Arabidopsis thaliana “, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
- Islam, M. M., Schroeder, W., Fernando, S. C., and Saha, R., “Microbiome-Virome Interactions in Bovine Rumen: The Role of Auxiliary Metabolic Genes in Relaxing Metabolic Bottlenecks “, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
- Schroeder, W., Kumar, J., and Saha, R., “Computation-Driven Mechanistic Understanding of the Cellular Cost and Regulation of Melanin Production “, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
- Saha, R, Liu, D., Hoynes-O’Connor, A.G., Liberton, M., Yu, J., Bhattacharyya, M., Balassy, A., Moon, T.S., Maranas, C.D., Pakrasi, H.B., “Synechocystis Sp. PCC 6803: Light Plus Endogenous Regulation Governing Gene Expression Patterns in the Diurnal Cycle”, AIChE annual meeting, Salt Lake City, UT, Nov 8-13, 2015.
- Saha, R., Berla, B.M., Pakrasi, H.B. and Maranas, C.D., “Computations-driven optimization of alkane production in Synechocystis sp. PCC 6803”, AIChE annual meeting, Atlanta, GA, Nov 16-21, 2014.
- Saha, R., Simons, M., Kumar, A., Guillard, L., Hirel, B and Maranas, C.D., “Towards multi-tissue type metabolic modeling of maize”, AIChE annual meeting, San Francisco, CA, Nov 3-8, 2013.
- Saha, R., Verseput, A.T., Mueller, T.J. and Maranas, C.D., “Contrasting the metabolic capabilities of cyanobacterial strains for assessing bio-production platform selection”, AIChE annual meeting, Pittsburgh, PA, Oct 28-Nov 2, 2012.
- Saha, R., Berla, B.M., Elvitigala, T., Page, L.E., Pakrasi, H.B. and Maranas, C.D., “Contrasting the Metabolic Capabilities of Multiple Cyanobacterial Species”, AIChE annual meeting, Minneapolis, MN, Oct 16-21, 2011.
- Saha, R., Suthers, P.F. and Maranas, C.D., “Towards Genome-Scale Metabolic Reconstruction of Plant Metabolism”, AIChE annual meeting, Salt Lake City, UT, Nov 7-14, 2010.
Poster Presentations
- Alsiyabi, A., Solis, A.G., Cahoon, E.B., and Saha, R., “A Kinetic Model of Plant Sphingolipid Metabolism Identifies Key Enzymes and Regulatory Interactions in the Pathway”, AIChE Annual Meeting, Nov 7-12, 2021
- Islam, M. M., “Metabolic Modeling of Microbes, Plants, and Microbial Ecosystems: Discovery and Redesign”, AIChE Virtual Annual Meeting 2020, November 16-20, 2020.
- Alsiyabi, A. and Saha, R., “Predicting the Regulatory Role of ORM Proteins in the Sphingolipid Biosynthesis Pathway Using Ensemble Kinetic Modeling”,Poster Presentation. 2020 AICHE Annual Meeting, Virtual., November 16-20, 2020.
- Islam, M. M., Sandhu, J., Walia, H, and Saha, R., “Data-Driven Identification of Global Regulatory Relationship in Rice Seed Under Heat Stress”, AIChE Virtual Annual Meeting 2020, November 16-20, 2020.
- Schroeder, W. L. “Toward Interventions Aiding the Future Viability of Important Crops Through Systems Biology”. Prerecorded Poster Presentation. 2020 AICHE Annual Meeting, Virtual. Nov. 16, 2020.
- Schroeder, W. L. and Saha, R.. “OptFill: A Tool for Infeasible Cycle-Free Gapfilling of Stoichiometric Metabolic Models”. Poster Presentation. 2020 AICHE Annual Meeting, Virtual. Nov. 20, 2020.
- Islam, M. M., Sandhu, J., Walia, H.,, and Saha, R., “Miren: An Optimization Tool for Transcriptomic Data-Driven Discovery of Global Regulatory Phenomena during Heat Stress in Rice Seed”, AIChE Annual Meeting 2019, Orlando, FL, November 9-15, 2019
- Long, D., Immethun, C., and Saha, R., “Development of Actinobacillus succinogenes 130Z as a Biotechnology Host for Succinic Acid Production“, AIChE Annual Meeting 2018, Pittsburgh, PA, October 28-November 2, 2018
- Islam, M. M., Sandhu, J., Walia, H, and Saha, R., “Effect of Heat Stress on Rice Seed Development: Discovering Global Regulatory Players and Modeling of Rice Metabolism “, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
- Daggumati, S.R., Le, T., Islam, M. M., and Saha, R., “Towards Modeling of Methane Recycling Lake Washington Microbial Community“, AIChE Annual Meeting 2017, Minneapolis, MN, October 28-November 2, 2017.
