2024
Shahreen, N., Chowdhury, N. B., Stone, E., Knobbe, E., and Saha, R.
A thermodynamic bottleneck in the TCA cycle contributes to acetate overflow in Staphylococcus aureus
Shahreen, N., Ahn, J., Alsiyabi, A., Chowdhury, N. B., Shinde, D., Chaudhari, S. S., Bayles, K. W., Thomas, V. C., and Saha, R.
Heterologous expression of critical pathway genes leads to complex pattern of increased yield of bioplastic precursors in Paraburkholderia sacchari ITP 101
Morris, D., Chowdhury, N. B., Immethun, C., and Saha, R.
Chowdhury, N. B., Chandran, A., K., N., Walia, Harkamal., and Saha, R.
AraRoot – A Comprehensive Genome-Scale Metabolic Model for the Arabidopsis Root System
Esterhuizen, L., Ampimah, N., Yandeau-Nelson, Marna., D., Nikolau, B., J., Sparks, Erin., E., and Saha, R.
Chowdhury, N. B., Pokorzynski, N. D., Rucks, E. A., Ouellette, S. P., CARABEO, R., and Saha, R.
Osinuga, A., Solis, A. G., Cahoon,, R. E., Al-Siyabi, A., Cahoon, E. B., and Saha, R.
Optimal Protein Allocation Controls the Inhibition of GltA and AcnB in Neisseria gonorrhoeae
Shahreen, N., Chowdhury, N. B., Saha, R.
2023
Cationic Lignin as an Efficient and Biorenewable Antimicrobial Material
Cerda, K. A., Kathol, M., Purohit, G., Zamani, E., Morton, M. D., Khalimonchuk, O., Saha, R., Dishari, S. K.
Decouard, B., Chowdhury, N. B., Saou, A., Rigault, M., Quillere, I., Sapir, T., Marmagne, Anne., Paysant le Roux, C., Launay-Avon, A., Guerard, F., Gakiere, B., Mauve, C., Levy-Leduc, C., Barbillon, P., Saha, R., Hirel, B., Courty, P., Wipf, D. and Dellagi, A.
Chowdhury, N. B., Simons-Senftle, M.,Decouard, B., Quillere. I., Rigault, M., Sajeevan, K. A., Acharya, B., Chowdhury, R., Hirel, B., Dellagi, A., Maranas, C., and Saha, R.
Dissecting Metabolic Landscape of Alveolar Macrophage
Malla, S., Sajeevan, K. A., Acharya, B., Chowdhury, R., and Saha, R.
Protocol to develop a synthetic biology toolkit for the non-model bacterium R. palustris
Kathol, M., Immethun, C., and Saha, R.
Salvi, A. M., Chowdhury, N. B., Saha, R., and Buan, N. R.
Opening the door to nitrogen fixation in oxygenic phototrophs
Morris, D., Chowdhury, N. B., Kathol, M., and Saha, R.
2022
Rhodopseudomonas palustris: A biotechnology chassis
Brown, B., Wilkins, M., and Saha, R.
Islam, M.M., Goertzen, A., Singh, P.K., and Saha, R.
Immethun, C., Kathol, M., and Saha, R.
Biotechnical applications of phasins: Small proteins with large potential
Brown, B., Immethun, C., Wilkins, M., and Saha, R.
Brown, B., Immethun, C., Alsiyabi, A., Long, D., Wilkins, M., and Saha, R.
2021
Alqarzaee, A. A., Chaudhari, S. S., Islam, M. M., Kumar, V., Zimmerman, M. C., Saha, R., Bayles, K. W., Frees, D., and Thomas, V. C.
Corn fiber as a biomass feedstock for production of succinic acid
Vallecilla-Yepez, L., Ramchandran, D., Long, D., Saha, R., and Wilkins, M. R.
Dissecting the Metabolic Reprogramming of Maize Root under Nitrogen Limiting Stress Condition
Chowdhury, N. B., Schroeder, W., Sarkar, D., Amiour, N., Quilleré, I., Hirel, B., Costas, C. D., and Saha, R.
Using EuGeneCid and EuGeneCim computational tools for synthetic biology
Schroeder., W., Baber, A.S., and Saha, R.
Alsiyabi, A., Stroh, S., and Saha, R.
Schroeder., W., Baber, A.S., and Saha, R.
Alsiyabi, A., Brown, B., Immethun, C., Wilkins, M., and Saha, R.
Enhancing in silico strain design predictions through next generation metabolic modeling approaches
Alsiyabi, A., Chowdhury, N.B., Long, D.S., Saha, R.
Kinetic Modeling of Metabolism: Present and Future
Islam, M. M., Schroeder, W., and Saha, R.
One step forward, two steps back: transcriptional advancements and fermentation phenomena in Actinobacillus succinogenes 130Z
Long, D.S., Immethun, C.M., Vallecilla-Yepez, L., Wilkins, M.R., and Saha, R.
Dissecting the regulatory roles of ORM proteins in the sphingolipid pathway of plants
Alsiyabi, A., Solis. A.G., Cahoon. E. B., and Saha, R.
2020
An integrated computational and experimental study to investigate Staphylococcus aureus metabolism
Mazharul Islam, M., Thomas, V.C., Van Beek, M., Saha, R.
Cationic π-Conjugated Polyelectrolyte Shows Antimicrobial Activity by Causing Lipid Loss and Lowering Elastic Modulus of Bacteria
Zamani, E., Johnson, T. J., Chatterjee, S., Immethun, C., Sarella, A., Saha, R., and Dishari, S. K.
Transcriptomic data-driven discovery of global regulatory features of rice seeds developing under heat stress
Islam, M. M., Sandhu, J., Walia, H., and Saha, R.
Protocol for Genome-scale Reconstruction and Melanogenesis Analysis of Exophiala dermatitidis
Schroeder., W., and Saha, R.
Investigation of microbial community interactions between lake Washington methanotrophs using genome-scale metabolic modeling
Islam, M. M., Le, T., Daggumati, S. R., and Saha, R.
Rhodopseudomonas palustris CGA009 polyhydroxybutyrate production from a lignin aromatic and quantification via flow cytometry
Brown, B., Immethun, C., Wilkins, M., and Saha, R.
Introducing an Optimization- and explicit Runge-Kutta- based Approach to Perform Dynamic Flux Balance Analysis
Schroeder., W., and Saha, R.
OptFill: ATool for Infeasible Cycle-Free Gapfilling of Stoichiometric Metabolic Models
Schroeder., W., and Saha, R.
KOPTIC: A novel approach for in silico prediction of enzyme kinetics and regulation
Schroeder., W., and Saha, R.
2019
Mechanistic Understanding of the Interactions of Cationic Conjugated Oligo- and Polyelectrolytes with Wild-type and Ampicillin-resistant Escherichia coli
Zamani, E., Chatterjee, S., Changa, T., Immethun, C., Sarella, A., Saha, R., Dishari, S. K.
Islam, M. M., Fernando, S. C., and Saha, R.
Al-Siyabi, A., Immethun, C., and Saha, R.
Applying Blended Learning Techniques: Perspectives from Chemical Engineering Computation
Immethun, C. M., Daher, T., and R Saha.
2018
Dissecting metabolic flux in C4 plants: experimental and theoretical approaches
Islam, M. M., Al-Siyabi, A., Obata, T., and Saha, R.
2017
Metabolic Engineering of the Pentose Phosphate Pathway for Enhanced Limonene Production in the Cyanobacterium Synechocystis sp. PCC 6803
Lin, P., Saha, R., Zhang, F., and Pakrasi, H.